PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037914t1
Common NameTCM_037914
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 350aa    MW: 41346.3 Da    PI: 4.3529
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037914t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.85.6e-13104188286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       Wt+qe+ +L+e+  ++  +l+r++l++ +W +v++k+  + + e++  qC+  ++ l++++kk+k  +++    +ss++++f+++e
  Thecc1EG037914t1 104 WTQQEIYVLLEVWGDRFLQLGRRSLRGEDWVDVAEKVsDALKSEKNEGQCRRMIDGLKRKFKKEKLKAESM-GLNSSKWVFFRKME 188
                       *************************************778999***********************99996.89999********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-15103189No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDDIDDDSRC PTKPYFFNRL KHPQYPRSIR TRHVYNYRPE EEDGEEENDD VEDDNDNDPD  60
VYYRRFKESE RFERYPKRQK LRTSAPSYQF AADHRDSFTN TYDWTQQEIY VLLEVWGDRF  120
LQLGRRSLRG EDWVDVAEKV SDALKSEKNE GQCRRMIDGL KRKFKKEKLK AESMGLNSSK  180
WVFFRKMEML MGLGSSFRQP ESGLACGVDS GEFVFMNTQV YLDRSNGFDE MRDSPAESEM  240
VEDDEEEEDG GSRMRMEGND EHSMRMLADS VQRFGKIYEK IESSKGEHMK ELEKMRMDFQ  300
KELEVQKKQI LERAQAEIAK IKEEDDADDE EESDDDDEDN DNSTENISE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9645524e-61JX964552.1 Gossypium hirsutum clone NBRI_TRANS-821 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007013222.10.0Alcohol dehydrogenase transcription factor Myb/SANT-like family protein, putative isoform 1
RefseqXP_007013223.10.0Alcohol dehydrogenase transcription factor Myb/SANT-like family protein, putative isoform 1
TrEMBLA0A061GMS80.0A0A061GMS8_THECC; Alcohol dehydrogenase transcription factor Myb/SANT-like family protein, putative isoform 1
STRINGBra001951.1-P1e-102(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97792733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.15e-90Trihelix family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]